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List of User Publications

  1. Sharman EH, Sharman KG, Ge YW, Lahiri DK, Bondy SC. Age-related changes in murine CNS mRNA gene expression are modulated by dietary melatonin. J Pineal Res. 2004 Apr; 36(3): 165-70.

  2. Klevecz RR, Bolen J, Forrest G, Murray DB. A genomewide oscillation in transcription gates DNA replication and cell cycle. Proc Natl Acad Sci U S A. 2004 Feb 3; 101(5): 1200-5. Epub 2004 Jan 20.

  3. Hampson S, Baldi P, Kibler D, Sandmeyer SB. Analysis of yeast's ORF upstream regions by parallel processing, microarrays, and computational methods. Proc Int Conf Intell Syst Mol Biol. 2000; 8:190-201.

  4. Samoszuk M, Tan J, Chorn G. Clonogenic growth of human breast cancer cells co-cultured in direct contact with serum-activated fibroblasts. Breast Cancer Res. 2005; 7(3): R274-83.

  5. Guan Y, Nothnagel EA. Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. Plant Physiol. 2004 Jul; 135(3): 1346-66.

  6. Furuta S, Jiang X, Gu B, Cheng E, Chen PL, Lee WH. Depletion of BRCA1 impairs differentiation but enhances proliferation of mammary epithelial cells. Proc Natl Acad Sci U S A. 2005 Jun 28; 102(26): 9176-81.

  7. Dewing P, Shi T, Horvath S, Vilain E. Sexually dimorphic gene expression in mouse brain precedes gonadal differentiation. Brain Res Mol Brain Res. 2003 Oct 21; 118(1-2): 82-90.

  8. Jean S. Wong, Xiaoqin Ye, Christy R. Muhlenkamp, and Sarjeet S. Gill. Effect of a peroxisome proliferator on 3b-hydroxysteroid dehydrogenase. Biochem and Biophys Rsrch Comm 2002 Mar. 11; 293: 549–553.

  9. Connolly PH, Caiozzo VJ, Zaldivar F, Nemet D, Larson J, Hung SP, Heck JD, Hatfield GW, Cooper DM. Effects of exercise on gene expression in human peripheral blood mononuclear cells. J Appl Physiol. 2004 Oct; 97(4):1461-9.

  10. Jonathan A. Deane, Matthew J. Trifilo, Claudine M. Yballe, Sangdun Choi, Thomas E. Lane, and David A. Fruman. Enhanced T Cell Proliferation in Mice Lacking the p85 Subunit of Phosphoinositide 3-Kinase. J Immunol 2004; 172: 6615-6625.

  11. Winokur ST, Chen YW, Masny PS, Martin JH, Ehmsen JT, Tapscott SJ, van der Maarel SM, Hayashi Y, Flanigan KM. Expression profiling of FSHD muscle supports a defect in specific stages of myogenic differentiation. Hum Mol Genet. 2003 Nov 15; 12(22): 2895-907.

  12. Wong JS, Gill SS. Gene expression changes induced in mouse liver by di(2-ethylhexyl) phthalate. Toxicol Appl Pharmacol. 2002 Dec 15; 185(3): 180-96.

  13. Yang WC, Devi-Rao GV, Ghazal P, Wagner EK, Triezenberg SJ. General and specific alterations in programming of global viral gene expression during infection by VP16 activation-deficient mutants of herpes simplex virus type 1. J Virol. 2002 Dec; 76(24): 12758-74.

  14. Wang A, Crowley DE. Global gene expression responses to cadmium toxicity in Escherichia coli. J Bacteriol. 2005 May; 187(9): 3259-66.

  15. Lin KK, Chudova D, Hatfield GW, Smyth P, Andersen B. Identification of hair cycle-associated genes from time-course gene expression profile data by using replicate variance. Proc Natl Acad Sci U S A. 2004 Nov 9; 101(45): 15955-60. Epub 2004 Nov 1.

  16. Shin Y, Kitayama A, Koide T, Peiffer DA, Mochii M, Liao A, Ueno N, Cho KW. Identification of neural genes using Xenopus DNA microarrays. Dev Dyn. 2005 Feb; 232(2):432-44. Erratum in: Dev Dyn. 2005 May; 233(1): 248.

  17. Wong R, Tran V, Morhenn V, Hung SP, Andersen B, Ito E, Wesley Hatfield G, Benson NR. Use of RT-PCR and DNA microarrays to characterize RNA recovered by non-invasive tape harvesting of normal and inflamed skin. J Invest Dermatol. 2004 Jul; 123(1): 159-67.

  18. Ja-Ryong Koo, MD, Kai Hui Liang, MD, Nosratola D Vaziri, MD. Microarray Analysis of Altered Gene Expression in Kidneys of Adult Spontaneously Hypertensive Rats. The Journal of Applied Research 2004; 4(1): 111-126.

  19. Itoh T, Karlsberg K, Kijima I, Yuan YC, Smith D, Ye J, Chen S. Letrozole-, anastrozole-, and tamoxifen-responsive genes in MCF-7aro cells: a microarray approach. Mol Cancer Res. 2005 Apr; 3(4): 203-18.

  20. Leonhardt N, Kwak JM, Robert N, Waner D, Leonhardt G, Schroeder JI. Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant. Plant Cell. 2004 Mar; 16(3): 596-615.

  21. Mahajan VB, Wei C, McDonnell PJ 3rd. Microarray analysis of corneal fibroblast gene expression after interleukin-1 treatment. Invest Ophthalmol Vis Sci. 2002 Jul; 43(7): 2143-51.

  22. Glaser J, Gonzalez R, Perreau VM, Cotman CW, Keirstead HS. Neutralization of the chemokine CXCL10 enhances tissue sparing and angiogenesis following spinal cord injury. J Neurosci Res. 2004 Sep 1; 77(5): 701-8.

  23. Davies DH, Liang X, Hernandez JE, Randall A, Hirst S, Mu Y, Romero KM, Nguyen TT, Kalantari-Dehaghi M, Crotty S, Baldi P, Villarreal LP, Felgner PL. Profiling the humoral immune response to infection by using proteome microarrays: high-throughput vaccine and diagnostic antigen discovery. Proc Natl Acad Sci U S A. 2005 Jan 18; 102(3): 547-52.

  24. Li L, Roden J, Shapiro BE, Wold BJ, Bhatia S, Forman SJ, Bhatia R. Reproducibility, fidelity, and discriminant validity of mRNA amplification for microarray analysis from primary hematopoietic cells. J Mol Diagn. 2005 Feb; 7(1): 48-56.

  25. Mak PA, Laffitte BA, Desrumaux C, Joseph SB, Curtiss LK, Mangelsdorf DJ, Tontonoz P, Edwards PA. Regulated expression of the apolipoprotein E/C-I/C-IV/C-II gene cluster in murine and human macrophages. A critical role for nuclear liver X receptors alpha and beta. J Biol Chem. 2002 Aug 30; 277(35): 31900-8.

  26. Paintlia AS, Paintlia MK, Singh AK, Stanislaus R, Gilg AG, Barbosa E, Singh I. Regulation of gene expression associated with acute experimental autoimmune encephalomyelitis by Lovastatin. J Neurosci Res. 2004 Jul 1; 77(1): 63-81.

  27. Tong L, Shen H, Perreau VM, Balazs R, Cotman CW. Effects of exercise on gene-expression profile in the rat hippocampus. Neurobiol Dis. 2001 Dec; 8(6): 1046-56.

  28. Colangelo EP, Guerinot ML. The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response. Plant Cell. 2004 Dec; 16(12): 3400-12.

  29. Sok JC, Kuriakose MA, Mahajan VB, Pearlman AN, DeLacure MD, Chen FA.Tissue-specific gene expression of head and neck squamous cell carcinoma in vivo by complementary DNA microarray analysis. Arch Otolaryngol Head Neck Surg. 2003 Jul; 129(7): 760-70.

  30. Li T, Chen YH, Liu TJ, Jia J, Hampson S, Shan YX, Kibler D, Wang PH. Using DNA microarray to identify Sp1 as a transcriptional regulatory element of insulin-like growth factor 1 in cardiac muscle cells. Circ Res. 2003 Dec 12; 93(12): 1202-9.

  31. Davies DH, Liang X, Hernandez JE, Randall A, Hirst S, Mu Y, Romero KM, Nguyen TT, Kalantari-Dehaghi M, Crotty S, Baldi P, Villarreal LP, Felgner PL. Profiling the humoral immune response to infection by using proteome microarrays: high-throughput vaccine and diagnostic antigen discovery. Proc Natl Acad Sci U S A. 2005 Jan 18; 102(3): 547-52.

  32. Wang R, Tischner R, Gutierrez RA, Hoffman M, Xing X, Chen M, Coruzzi G, Crawford NM. Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol. 2004 Sep; 136(1): 2512-22.

  33. Hampson S, Baldi P, Kibler D, Sandmeyer SB. Analysis of yeast's ORF upstream regions by parallel processing, microarrays, and computational methods. Proc Int Conf Intell Syst Mol Biol. 2000; 8:190-201.

  34. Samoszuk M, Tan J, Chorn G. Clonogenic growth of human breast cancer cells co-cultured in direct contact with serum-activated fibroblasts. Breast Cancer Res. 2005; 7(3): R274-83.

  35. Marinotti O, Nguyen QK, Calvo E, James AA, Ribeiro JM. Microarray analysis of genes showing variable expression following a blood meal in Anopheles gambiae. Insect Mol Biol. 2005 Aug; 14(4): 365-73.

  36. Biessmann H., Nguyen Q K, Le D, Walter M F. Microarray-based survey of a subset of putative olfactory genes in the mesquito Anopheles gambiae. Insect Mol Biol. 2005 Nov; 14(6): 575-589.

UCI DNA & Protein MicroArray Facility Copyright © 2006 | Last updated Nov. 2, 2006
Department of Biological Chemistry | UC Irvine School of Medicine | University of California, Irvine